Welcome to SLUBI

The SLU Bioinformatics Infrastructure

Sveriges lantbruksuniversitet - Swedish University of Agricultural Sciences

Our main goal is to provide support and training in Bioinformatics for SLU staff, as well as build a strong community of bioinformaticians within SLU. Our staff is located on the 3 campuses of Ultuna, Umeå and Alnarp. We want to join forces and coordinate teaching activities, common resources (hardware, software)

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Bioinformatics support

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How do I get bioinformatics support from SLUBI?

VH faculty: To get bioinformatics support at VH faculty, please send and email to: slubi-vh@slu.se. We will arrange a first consultation meeting to discuss your project and what kind of support is needed. The consultation is for free. For additional support, the support fee is 600 SEK/h.

LTV faculty: Visit the PlantLink Bioinformatics support page for more information

S faculty: Visit the Umeå Plant Science Centre Bioinformatics facility page

NJ faculty: Information soon available

About us

We are located at 3 SLU campuses: Alnarp, Ultuna and Umeå to provide support to researchers from all 4 faculties: LTV (Faculty of Landscape Architecture, Horticulture and Crop Production Science), NJ (Faculty of Natural Resources and Agricultural Sciences ), S (Faculty of Forest Sciences) and VH (Faculty of veterinary Medicine and Animal Science),

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Organisation of the SLU Bioinformatics Infrastructure

Our team

Erik Bongcam-Rudloff

Erik Bongcam-Rudloff, head (VH, Ultuna)

Juliette Hayer

Juliette Hayer, coordinator (Ultuna)

Anders Carlsson

Anders Carlsson, board member (LTV, Alnarp)

Anders Carlsson

Erik Alexandersson (PlantLink director, Alnarp)

Magna Nullam

Ganapathi Varma Saripella (AKA Varma), expert bioinformatician (LTV, Alnarp)

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Nicolas Delhomme, expert bioinformatician (S, Umeå)

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Thomas Moritz, board member (S, Umeå)

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Pär Ingvarsson, NJ-bioinformatics steering group (Ultuna)

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Adnan Niazi, expert bioinformatician (VH, Ultuna)

Orci Convallis

Domenico Simone, expert bioinformatician (NJ, Ultuna)

Orci Convallis

Johan Meijer, board member (NJ, Ultuna)

Orci Convallis

Sari Peura, NJ-bioinformatics steering group (Ultuna)

Events and News

Upcoming events!!

Bioinformatics drop-in sessions in Ultuna will start during fall 2018: to be announced soon!

R workshop 24th of September: SLUBI and the research school GS-VMAS are jointly organising a R-day for researchers and supervisors. Send an email to juliette.hayer@slu.se to register before the 10th of September!

Information to the participants here.

GS-VMAS_poster

Past events:

SLUBI day on the 4th of June 2018

SLUBIday_June2018

Kick-off meeting 27th of October 2017

SLUBI’s Kick-off meeting group_pic

Computing resources

SLUBI computing resources:

We have computing resources at all campuses and will try to coordinate the management of these. More information coming soon.

Computing resources for the Swedish research community:

We would like to remind that researchers can get computing resources for free by applying to SNIC (Uppmax and other clusters).

Cloud computing

SLU has an agreement with Microsoft Azure for cloud computing (including price discounts). You can get more information by contacting the IT-support

SLUBI on GitHub

SLUBI’s GitHub

Contact

If you have any question, please feel free to ask our coordinator here!