The SLU Bioinformatics Infrastructure
Sveriges lantbruksuniversitet - Swedish University of Agricultural Sciences
Our main goal is to provide support and training in Bioinformatics for SLU staff, as well as build a strong community of bioinformaticians within SLU. Our staff is located on the 3 campuses of Ultuna, Umeå and Alnarp. We want to join forces and coordinate teaching activities, common resources (hardware, software)
How do I get bioinformatics support from SLUBI?
LTV faculty: Visit the PlantLink Bioinformatics support page for more information
NJ faculty: To get bioinformatics support at NJ faculty, please send and email to: firstname.lastname@example.org.
S faculty: Visit the Umeå Plant Science Centre Bioinformatics facility page
VH faculty: To get bioinformatics support at VH faculty, please send and email to: email@example.com.
We suggest that researchers contact SLUBI at an early stage of planning to discuss the planned project, experimental design and what kind of support that is needed. This consultation is for free. SLUBI support with any subsequent bioinformatics analyses costs 600 SEK/h.
SLUBI organises Bioinformatics drop-in sessions at all 3 campuses for answering various Bioinformatics questions around a fika. It is also the opportunity for bioinformaticians to gather and exchange about their experiences.
Every second Wednesday (even weeks) 13.00-14.00 in Ulls Hus - entrance floor. We wait for you with fika at the sofa’s corner (between butik Amigo and students computers).
Usually on Mondays 10.00-12.00 at UPSC bioinformatics facility (UPSC, KBC, room KB.K3). Please contact Nicolas (firstname.lastname@example.org) before to make sure that there is a drop-in that day and/or to get access to the place (UmU house).
Every second Wednesday (even weeks) 13.30-14.30 - Aquarium room in Horticum. These bioinformatics drop-in sessions are combined with the weekly R-help group.
We are located at 3 SLU campuses: Alnarp, Ultuna and Umeå to provide support to researchers from all 4 faculties: LTV (Faculty of Landscape Architecture, Horticulture and Crop Production Science), NJ (Faculty of Natural Resources and Agricultural Sciences ), S (Faculty of Forest Sciences) and VH (Faculty of veterinary Medicine and Animal Science),
Course: Introduction to Bioinformatics - Ultuna January-March 2019: Please visit the course page
Bioinformatics drop-in sessions in Ultuna
R workshop 24th of September: SLUBI and the research school GS-VMAS jointly organised a R-day for researchers and supervisors.
SLUBI day on the 4th of June 2018
Kick-off meeting 27th of October 2017
SLUBI computing resources:
We have computing resources at all campuses and will try to coordinate the management of these. More information coming soon.
Computing resources for the Swedish research community:
We would like to remind that researchers can get computing resources for free by applying to SNIC (Uppmax and other clusters).
SLU has an agreement with Microsoft Azure for cloud computing (including price discounts). You can get more information by contacting the IT-support
SLUBI on GitHub
If you have any question, please feel free to ask our coordinator here!