Welcome to SLUBI

The SLU Bioinformatics Infrastructure

Sveriges lantbruksuniversitet - Swedish University of Agricultural Sciences

Our main goal is to provide support and training in Bioinformatics for SLU staff, as well as build a strong community of bioinformaticians within SLU. Our staff is located on the 3 campuses of Ultuna, Umeå and Alnarp. We want to join forces and coordinate teaching activities, common resources (hardware, software)

SLU_flag

Bioinformatics support

How do I get bioinformatics support from SLUBI?

LTV faculty: Visit the PlantLink Bioinformatics support page for more information

NJ faculty: To get bioinformatics support at NJ faculty, please send and email to: slubi-nj@slu.se.

S faculty: Visit the Umeå Plant Science Centre Bioinformatics facility page

VH faculty: To get bioinformatics support at VH faculty, please send and email to: slubi-vh@slu.se. We will arrange a first consultation meeting to discuss your project and what kind of support is needed. The consultation is for free. We provide short term support for free (one or two days). For additional support (long term), the support fee is 600 SEK/h.

SLUBI_logo

Drop-in sessions

SLUBI organises Bioinformatics drop-in sessions at all 3 campuses for answering various Bioinformatics questions around a fika. It is also the opportunity for bioinformaticians to gather and exchange about their experiences.

In Ultuna

Every second Wednesday (even weeks) 13.00-14.00 in Ulls Hus - entrance floor. We wait for you with fika at the sofa’s corner (between butik Amigo and students computers).

In Umeå

Usually on Mondays 10.00-12.00 at UPSC bioinformatics facility (UPSC, KBC, room KB.K3). Please contact Nicolas (nicolas.delhomme@umu.se) before to make sure that there is a drop-in that day and/or to get access to the place (UmU house).

In Alnarp

Every second Wednesday (even weeks) 13.30-14.30 - Aquarium​ room in Horticum. These bioinformatics drop-in sessions are combined with the weekly R-help group.

About us

We are located at 3 SLU campuses: Alnarp, Ultuna and Umeå to provide support to researchers from all 4 faculties: LTV (Faculty of Landscape Architecture, Horticulture and Crop Production Science), NJ (Faculty of Natural Resources and Agricultural Sciences ), S (Faculty of Forest Sciences) and VH (Faculty of veterinary Medicine and Animal Science),

Natoque Vitae

Organisation of the SLU Bioinformatics Infrastructure

Our team

Erik Bongcam-Rudloff

Erik Bongcam-Rudloff, head (VH, Ultuna)

Juliette Hayer

Juliette Hayer, coordinator (Ultuna)

Anders Carlsson

Anders Carlsson, board member (LTV, Alnarp)

Anders Carlsson

Erik Alexandersson (PlantLink director, Alnarp)

Magna Nullam

Ganapathi Varma Saripella (AKA Varma), expert bioinformatician (LTV, Alnarp)

Natoque Vitae

Nicolas Delhomme, expert bioinformatician (S, Umeå)

Natoque Vitae

Thomas Moritz, board member (S, Umeå)

Natoque Vitae

Pär Ingvarsson, NJ-bioinformatics steering group (Ultuna)

Dolor Penatibus

Adnan Niazi, expert bioinformatician (VH, Ultuna)

Orci Convallis

Domenico Simone, expert bioinformatician (NJ, Ultuna)

Orci Convallis

Johan Meijer, board member (NJ, Ultuna)

Orci Convallis

Sari Peura, NJ-bioinformatics steering group (Ultuna)

Events and News

Upcoming events!!

Course: Introduction to Bioinformatics - Ultuna January-March 2019: Please visit the course page

Bioinformatics drop-in sessions in Ultuna

Dropin_flyer

Past events:

R workshop 24th of September: SLUBI and the research school GS-VMAS jointly organised a R-day for researchers and supervisors.

GS-VMAS_poster

SLUBI day on the 4th of June 2018

SLUBIday_June2018

Kick-off meeting 27th of October 2017

SLUBI’s Kick-off meeting group_pic

Computing resources

SLUBI computing resources:

We have computing resources at all campuses and will try to coordinate the management of these. More information coming soon.

Computing resources for the Swedish research community:

We would like to remind that researchers can get computing resources for free by applying to SNIC (Uppmax and other clusters).

Cloud computing

SLU has an agreement with Microsoft Azure for cloud computing (including price discounts). You can get more information by contacting the IT-support

SLUBI on GitHub

SLUBI’s GitHub

Contact

If you have any question, please feel free to ask our coordinator here!