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breeding (4)

code along (18)

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course (19)

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dardel (1)

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meeting (7)

metagenomics (1)

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networking (1)

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news (2)

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plants (1)

presentation (1)

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seminar (3)

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News and Events

Advanced Plant Breeding and Genetic Resources

course

Msc

breeding

Genetic Variation and Breeding Strategies for Sustainable Agriculture - autumn 2025

SLU Breeding Network meeting

networking

breeding

presentation

Breeding 360: Collaboration across disciplines

Q&A on Dardel, with HPC support staff

workshop

high performance computing

NAISS

Dardel

Session 25 in the series Basic Biostatistics and Bioinformatics

Analysis of High Throughput Sequencing RNA-Seq Data

course

training

nextflow

The history of RNA sequencing, and modern ways to analyse the data - autumn 2025

Make pretty graphics - learn to ggplot in R

workshop

code along

reproducibility

R

ggplot

Session 24 in the series Basic Biostatistics and Bioinformatics

Kubernetes and nextflow

workshop

training

kubernetes

nextflow

A collaborative workshop to explore possible use cases of kubernetes in bioinformatics applications

Data Management Resources at SLU

workshop

data management

reproducibility

Session 23 in the series Basic Biostatistics and Bioinformatics

Common statistical tests

workshop

statistics

code along

Session 22 in the series Basic Biostatistics and Bioinformatics

Multi-omics analyses of the microbial community

course

training

metagenomics

Everything you ever wanted to know about metagenomics.

Plant Biology for Breeding and Protection

course

training

plants

breeding

and how bioinformatics can help you and your plants!

Make reports, presentations and hompages in Quarto

workshop

quarto

reproducibility

code along

Session 21 in the series Basic Biostatistics and Bioinformatics

Reporting with Markdown

workshop

markdown

reproducibility

code along

Session 20 in the series Basic Biostatistics and Bioinformatics

Data handling and high-quality illustrations for publications

course

training

git

reproducibility

quarto

gs-vmas

A course on how to handle data and create appropriate illustrations for your project.

Introduction to Python

workshop

python

reproducibility

code along

Session 19 in the series Basic Biostatistics and Bioinformatics

PCA - Theory and Practice

workshop

PCA

statistics

code along

Session 18 in the series Basic Biostatistics and Bioinformatics

Swedish Bioinformatics Workshop 2024

workshop

outreach

November 4th & 5th, 2024 on Campus Ultuna

Introduction to Bioinformatics

course

training

NGS

reproducibility

RNAseq

gs-vmas

A course together with SLU’s Graduate School for Veterinary Medicine and Animal Science.

Reproducibility in Research with a focus on data analysis using the program R

course

training

git

reproducibility

gs-vmas

Tips, tricks and tools for making your research more reproducible.

Introduction to R

workshop

R

code along

Session 17 in the series Basic Biostatistics and Bioinformatics

Analysis of High Throughput Sequencing RNA-Seq Data

course

training

nextflow

The history of RNA sequencing, and modern ways to analyse the data.

Introduction to the Dardel Supercomputer

workshop

HPC/ NAISS

dardel

high performance computing

Session 16 in the series Basic Biostatistics and Bioinformatics

Introduction to the command line

workshop

code along

command line

Session 15 in the series Basic Biostatistics and Bioinformatics

Shiny - interactive data visualization in R

workshop

code along

R

Session 14 in the series Basic Biostatistics and Bioinformatics

Project organization in R

workshop

reproducibility

R

Session 13 in the series Basic Biostatistics and Bioinformatics

Introduction to git and Github

workshop

git

GitHub

reproducibility

Session 12 in the series Basic Biostatistics and Bioinformatics

Applied Bioinformatics

course

training

nextflow

Teaching an introduction to Nextflow to a diverse group of students from all over Sweden.

Tools and tricks for reproducible research

workshop

reproducibility

git

quarto

Session 11 in the series Basic Biostatistics and Bioinformatics

Workshop session at Sasuf Week

workshop

meeting

The South Africa Sweden University Forum (SASUF) is organizing their annual Research and Innovation Week and we are offering a workshop for you.

Introduction to High performance Computing (HPC)

workshop

high performance computing

slurm

Session 10 in the series Basic Biostatistics and Bioinformatics

Intermediate ggplot in R

workshop

R

ggplot

code along

Session 9 in the series Basic Biostatistics and Bioinformatics

Introduction to Neural Networks

workshop

python

neural networks

code along

Session 8 in the series Basic Biostatistics and Bioinformatics

Nordic Network of Agricultural Data Scientists

network

training

A new collaboration together with colleagues from other Nordic countries, exchange ideas and develop training materials.

Introduction to Python

workshop

python

code along

Session 7 in the series Basic Biostatistics and Bioinformatics

Introduction to writing functions in R

workshop

code along

reproducibility

R

Session 6 in the series Basic Biostatistics and Bioinformatics

Population structure analyses

workshop

code along

R

Session 5 in the series Basic Biostatistics and Bioinformatics

Introduction to Markdown

workshop

code along

reproducibility

markdown

Session 4 in the series Basic Biostatistics and Bioinformatics

PCA: Theory and Practice

workshop

PCA

statistics

code along

Session 3 in the series Basic Biostatistics and Bioinformatics

Introduction to the command line

workshop

code along

command line

Session 2 in the series Basic Biostatistics and Bioinformatics

Introduction to Bioinformatics

course

training

A course together with SLU’s Graduate School for Veterinary Medicine and Animal Science

Bioinformatics in Umeå Workshop Series

seminar

nextflow

education

workshop

The first instance of the new bioinformatics workshop series. Learn about Nextflow and how to write your own pipeline.

Introduction to R

workshop

R

code along

Session 1 in the series Basic Biostatistics and Bioinformatics

Genome-wide predictions in breeding: genotype-phenotype associations and genomic selection

course

training

An introduction to R and large data handling

3B’s: Basic Biostatistics & Bioinformatics

seminar

workshop

statistics

Today we finally launch our long awaited collaboration with SLU’s Center for Statistics.

Presentation: Practical considerations and available tools for big data science

outreach

reproducibility

education

Talking reproducible science at the Microbiome Research Initiative Meeting 2023.

Analysis of High Throughput Sequencing RNA-Seq Data

course

training

The 2023 edition of our popular course - learn about the ins and outs of working with RNA-sequencing data.

SLU’s Day of Bioinformatics

symposium

meeting

Terrestrial and aquatic communities, breeding, crop production, animal health, automatization – bioinformatics can also be for you! Listen to exciting SLU projects and be inspired.

SciFest 2023

outreach

education

We had a lot of fun at Uppsala’s Science Festival this year, talking about viruses, sequencing and metagenomics.

Applied Bioinformatics

course

training

nextflow

Teaching an introduction to Nextflow to a diverse group of students from all over Sweden.

Applied population genetics in plant disease epidemiology,

course

meeting

education

We are happy to teach the bioinformatics of population genetics in this masters course.

SLUBI day 2023

news

meeting

A day filled with bioinformatics

Plant Biology for Breeding and Protection

course

breeding

MSc course held in Alnarp, Ultuna and online.

Analysis of High Throughput Sequencing RNA-Seq Data

course

training

SLUBI’s very own course on RNA-sequencing data, held for the Research School Organism Biology.

Introduction to Bioinformatics

course

training

A course together with SLU’s Graduate School for Veterinary Medicine and Animal Science.

Analysis of High Throughput Sequencing RNA-Seq Data

course

training

SLUBI’s very own course on analysing RNA-sequencing data.

Introduction to Bioinformatics

course

training

A course together with SLU’s Graduate School for Veterinary Medicine and Animal Science.

Statistics seminar series

seminar

statistics

The 2021 edition of the seminar series of SLU’s Center for Statistics, this year on environmental statistics

High Throughput Sequencing Data Analysis Workshop

workshop

education

A workshop organised and sponsored by the UPSCb, as part of SLUBI.

Uppmax meeting

workshop

meeting

Discuss existing computing solutions and future possibilities.

Workshop for supervisors: Introduction to, and visualisation in R

education

workshop

Training day to get to know the possibilities of R

SLUBI day 2018

news

meeting

Showcasing SLUBI support and discussing long-term plans.

SLUBI kickoff meeting

meeting

We are kicking off SLUBI with a celebration of bioinformatics.